Explore Workflows

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/mr-c/2020-covid-19-bh-viz.git

Path: Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Branch/Commit ID: main

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/varscan.cwl

Branch/Commit ID: master

https://github.com/ENCODE-DCC/pipeline-container.git

Path: local-workflows/encode_mapping_workflow.cwl

Branch/Commit ID: v1.0

This CWL workflow outlines the steps for setting up and executing an experiment based on objectives, SOP references, parameters, and experimental design. Version: 1.0 Description: Workflow for executing and tracking experiments. Includes validation and logging steps.

https://github.com/pascmont/cwltest.git

Path: myAIWorkflow3.cwl

Branch/Commit ID: main

https://github.com/azzaea/tsts.git

Path: cwl/host.sort.workflow.cwl

Branch/Commit ID: master

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: low-vaf

Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/tmb_workflow.cwl

Branch/Commit ID: master

https://github.com/uniqueg/cwl-example-workflows.git

Path: hashsplitter-workflow.cwl

Branch/Commit ID: master

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: 94520dc

https://github.com/simleo/workflow-run-crate.git

Path: tools/cwlprov_to_crate/tld/tld.cwl

Branch/Commit ID: tld_workflow_bad_connection