Explore Workflows
View already parsed workflows here or click here to add your own
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try_wf1.cwl
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Path: yw_cwl_modeling/manual_paleocar_cwl_model/try_wf1.cwl Branch/Commit ID: master |
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wf_clipseqcore_pe_2barcodes.cwl
Workflow for handling reads containing two barcodes. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs |
Path: cwl/wf_clipseqcore_pe_2barcodes.cwl Branch/Commit ID: master |
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Optical throughput measurements via muon ring analysis
Upon receiving a new DL0 data product (from either Monte Carlo simulations or observations), DPPS triggers the CalibPipe (ctapipe-process) to process the data using ctapipe, extracting the signal charges and reconstructing muon parameters. The second step involves using the CalibPipe tool to estimate the telescope’s optical throughput using a predefined number of muon events. |
Path: uc-optical-throughput-calibration-with-muons.cwl Branch/Commit ID: master |
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prefetch_fastq.cwl
Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd |
Path: bio-cwl-tools/sratoolkit/prefetch_fastq.cwl Branch/Commit ID: preprocessing |
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workflow.cwl
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Path: flow_apollo2_data_processing/processing/workflow.cwl Branch/Commit ID: master |
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transform.cwl
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Path: workflows/dnaseq/transform.cwl Branch/Commit ID: 1.0 |
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EMG pipeline v3.0 (single end version)
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Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 3f85843 |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-08-taxonomic-analysis.cwl |
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Find reads with predicted coding sequences above 60 AA in length
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Path: workflows/orf_prediction.cwl Branch/Commit ID: 71d9c83 |
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bam-bedgraph-bigwig.cwl
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Path: subworkflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: master |
