Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630
	cwlsite.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/site/cwlsite.cwl Branch/Commit ID: 216fbe57afcf67d81c99b49c1aa3aee0844f0a6a
	qc-basic.workflow.cwl	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/qc-basic.workflow.cwl Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: 6e9f82a6d2195d4f16f28fd6e1485138372fb430
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03
	hisat2-cufflinks_wf_pe.cwl	https://github.com/pitagora-network/pitagora-cwl.git Path: workflows/hisat2-cufflinks/paired_end/hisat2-cufflinks_wf_pe.cwl Branch/Commit ID: fb189fef3ddcb0d6619f9a22b4f57b880db654c0
	tindaisy.cwl	https://github.com/ding-lab/TinDaisy.git Path: cwl/workflows/tindaisy.cwl Branch/Commit ID: 43330deda32a6ad9e4f8a8cc51a2cf1ba380fff6
	Preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e