Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/datirium/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 8a92669a566589d80fde9d151054ffc220ed4ddd |
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mutect parallel workflow
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https://github.com/mr-c/PACT.git
Path: subworkflows/mutect.cwl Branch/Commit ID: mr-c-patch-1 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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genome-kallisto-index.cwl
Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index |
https://github.com/Barski-lab/workflows.git
Path: tools/genome-kallisto-index.cwl Branch/Commit ID: ea2a2ab57710fcf067f67305f3dd6ad29094da1a |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/datirium/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: e99e80a2c19682d59947bde04a892d7b6d90091c |
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kmer_gc_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_gc_extract_wnode.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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mut3.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut3.cwl Branch/Commit ID: eba80916b5cde8bdbd56c077c94240ddf796a27b |
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xenbase-sra-to-fastq-pe.cwl
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https://github.com/datirium/workflows.git
Path: subworkflows/xenbase-sra-to-fastq-pe.cwl Branch/Commit ID: 7290eb220c90a087dffde04efae3678286aa92d0 |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
