Explore Workflows
View already parsed workflows here or click here to add your own
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wf_trim_and_map_se_nostats.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
Path: cwl/wf_trim_and_map_se_nostats.cwl Branch/Commit ID: master |
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umi per-lane alignment subworkflow
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Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
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Salmon quantification, FASTQ -> H5AD count matrix
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Path: steps/salmon-quantification.cwl Branch/Commit ID: cee6caf |
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blast-reuse-image.cwl
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Path: cwl/blast-reuse-image.cwl Branch/Commit ID: master |
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Transcripts annotation workflow
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Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: cwlexec |
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add_multiply_example.cwl
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Path: scriptcwl/examples/add_multiply_example.cwl Branch/Commit ID: master |
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Hello World
Outputs a message using echo |
Path: workflows/hello/hello.cwl Branch/Commit ID: master |
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sc_atac_seq_initial_analysis.cwl
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Path: steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: 06aeffe |
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LSU-from-tablehits.cwl
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Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: master |
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wf5.cwl
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Path: ros/wf5/wf5.cwl Branch/Commit ID: master |
