Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph checker-workflow-wrapping-workflow.cwl

https://github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow.git

Path: checker-workflow-wrapping-workflow.cwl

Branch/Commit ID: 2.6.8_1.4
workflow graph collate_unique_SSU_headers.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 43d2fb8
workflow graph preparation_workflow.cwl

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: utils-cwl/subworkflow/preparation_workflow.cwl

Branch/Commit ID: master
workflow graph ConcordanceTestWorkflow.cwl

https://github.com/DataBiosphere/topmed-workflows.git

Path: vcf-comparator/ConcordanceTestWorkflow.cwl

Branch/Commit ID: 1.28.0
workflow graph count-lines3-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines3-wf.cwl

Branch/Commit ID: master
workflow graph EMG assembly for paired end Illumina

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 9c57dba
workflow graph count-lines18-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines18-wf.cwl

Branch/Commit ID: main
workflow graph bgzip and index VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: toil_compatibility
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: master
workflow graph hi-c-processing-pairs.cwl

https://github.com/4dn-dcic/docker-4dn-hic.git

Path: cwl/hi-c-processing-pairs.cwl

Branch/Commit ID: master