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Graph Name Retrieved From View
workflow graph BD Rhapsody™ WTA Analysis Pipeline

The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

https://github.com/longbow0/cwl.git

Path: v1.8/rhapsody_wta_1.8.cwl

Branch/Commit ID: master

Packed ID: main

workflow graph bqsr_workflow.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/BQSR/bqsr_workflow.cwl

Branch/Commit ID: 0.0.33_dmp

workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: test

workflow graph topmed-alignment-checker.cwl

https://github.com/stain/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: 4c46a709e7b986a09b9eb27ccdb0540e69e006

workflow graph 04-quantification-se-unstranded.cwl

RNA-seq 04 quantification

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl

Branch/Commit ID: master

workflow graph exomeseq-00-prepare-reference-data.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-00-prepare-reference-data.cwl

Branch/Commit ID: master

workflow graph count-lines14-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines14-wf.cwl

Branch/Commit ID: main

workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-wf4.cwl

Branch/Commit ID: main

Packed ID: main

workflow graph bismark_chimeric_singlelib.cwl

https://github.com/CompEpigen/PipelineOlympics.git

Path: CWL/workflows/Bismark_chimeric/bismark_chimeric_singlelib.cwl

Branch/Commit ID: main

workflow graph BuildCembaReferences.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/BuildCembaReferences.cwl

Branch/Commit ID: fac9e1a4363b6d35a4a62fdf75d58c997be8790d