Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	wf_clipseqcore_pe_2barcodes.cwl Workflow for handling reads containing two barcodes. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs	https://github.com/YeoLab/eclip.git Path: cwl/wf_clipseqcore_pe_2barcodes.cwl Branch/Commit ID: e2a314ff7646c4ea7b90f65caad0452ef6874757
	tt_kmer_compare_wnode Pairwise comparison	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: d87a0786b52809b36201adb7d3d3ab2b8bbbef20
	harmonization_novoalign_multi_readgroup.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/harmonization_novoalign_multi_readgroup.cwl Branch/Commit ID: f55f0011de7db66f873ffb0f700f3fe26b33911e
	RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec
	metrics.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1
	secret_wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/secret_wf.cwl Branch/Commit ID: 2cec4eebeb3461844b9102b89551b8765c7be348
	tt_kmer_compare_wnode Pairwise comparison	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad
	step-valuefrom-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/step-valuefrom-wf.cwl Branch/Commit ID: 148f11b11d31c098196e649f680797f0b4680114
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	scatterfail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/scatterfail.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06