Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rnaseq-se.cwl

Runs RNA-Seq BioWardrobe basic analysis with single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/rnaseq-se.cwl

Branch/Commit ID: master
workflow graph chipseq-se.cwl

Runs ChIP-Seq BioWardrobe basic analysis with single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/chipseq-se.cwl

Branch/Commit ID: master
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph module-1

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-1.cwl

Branch/Commit ID: dev
workflow graph tRNA_selection.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 5833078
workflow graph giab_haplotypecaller.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/giab_haplotypecaller.cwl

Branch/Commit ID: master
workflow graph mito_cleanup

This workflow detect and remove Mitochondrial from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/mitochondrial-cleanup.cwl

Branch/Commit ID: master
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 5833078
workflow graph steps.cwl

https://github.com/dimitrapanou/scrnaseq-cwl.git

Path: steps.cwl

Branch/Commit ID: b8e641c
workflow graph bird_workflow.cwl

https://github.com/ReddyLab/bird-workflow.git

Path: bird_workflow.cwl

Branch/Commit ID: main