Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi molecular alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4
	03-map-se-blacklist-removal.cwl ATAC-seq 03 mapping - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: 067e518c3e3a7488e2aaa0b0b269be87d18fc99e
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	pangenome-generate_spoa.cwl	https://github.com/arvados/czi-pangenome-usecase.git Path: pangenome-generate_spoa.cwl Branch/Commit ID: 25a42bc03a51210bf57f2018692d3852b7fa1188
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b
	cwlsite.cwl	https://github.com/common-workflow-language/cwl-website.git Path: site/cwlsite.cwl Branch/Commit ID: 9bfcd1b83fe13e2bababec2c43356db832a030d7
	workflow.cwl	https://github.com/52North/testbed16-jupyter-notebooks.git Path: workflow_water_masks/workflow.cwl Branch/Commit ID: 56e89ba5babd93134012f77a63027a7a2f65b927
	simple_two_step.cwl	https://github.com/ncbi/cwl-demos.git Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: 342d1669431d15c8a27589e4c22a91a05033b56c
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl Branch/Commit ID: 3aabbb0f6635bb9354ad52f616ab7cfc61848eb6