Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 04-quantification-pe-stranded.cwl

RNA-seq 04 quantification

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl

Branch/Commit ID: dd2241dbbbc23abd91b5e6a18c139530e7ef8d2b
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/user_guide.git

Path: _includes/cwl/22-nested-workflows/1st-workflow.cwl

Branch/Commit ID: 39ed9658fa4ff80fff2e32bf481dbf64a8fc9529
workflow graph Create Genomic Collection for Bacterial Pipeline, ASN.1 input

https://github.com/ncbi/pgap.git

Path: genomic_source/wf_genomic_source_asn.cwl

Branch/Commit ID: 66b5bc323dcd23e1b2c14bf4783babf0f15ca43b
workflow graph Runs InterProScan on batches of sequences to retrieve functional annotations.

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/InterProScan-v5-chunked-wf.cwl

Branch/Commit ID: e9bbe2917384efc75ba067db23612bc8e22f3f06
workflow graph 05-quantification.cwl

ChIP-seq - Quantification - samples: treatment

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl

Branch/Commit ID: a502ff01b0857f8067aa541effc46a4c8b10d90f
workflow graph nestedworkflows.cwl

https://github.com/common-workflow-language/user_guide.git

Path: _includes/cwl/22-nested-workflows/nestedworkflows.cwl

Branch/Commit ID: 39ed9658fa4ff80fff2e32bf481dbf64a8fc9529
workflow graph star-cufflinks_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/star-cufflinks/paired_end/star-cufflinks_wf_pe.cwl

Branch/Commit ID: 3affcd5588e273779b8b4084839ed0582ba2ea18
workflow graph split-bams-by-strand-and-index.cwl

Split reads in a BAM file by strands and index forward and reverse output BAM files

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/quant/split-bams-by-strand-and-index.cwl

Branch/Commit ID: 13826f526a99e151e9cf5f22e70bdcf4feea73f4
workflow graph pcr-bottleneck-coef.cwl

ChIP-seq - map - PCR Bottleneck Coefficients

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd
workflow graph bgzip and index VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bgzip_and_index.cwl

Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a