Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: b957a4f681bf0ca8ebba4e0d0ec3936bf79620c5
	tRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/tRNA_selection.cwl Branch/Commit ID: cac44f2cf14110fde9951161c663c4525772f616
	EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/emg-qc-paired.cwl Branch/Commit ID: d3b8e458b7f9e52a12c0008aca645de9230e8bc9
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4
	Build Bismark indices Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input.	https://github.com/datirium/workflows.git Path: workflows/bismark-index.cwl Branch/Commit ID: d1bef74924efcb8bfaa00987b3f148d5a192b7a9
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485
	Example of setting up a simulation system Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).	https://github.com/stain/biobb_example_workflow.git Path: protein_md.cwl Branch/Commit ID: 1cf3dc0b25804a648757cd20c45f49c62e095af1
	import_schema-def.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/import_schema-def.cwl Branch/Commit ID: fe164457f370c2dfec5156f6d6d45818d53cb871
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485