Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
atm-plev.cwl
|
https://github.com/E3SM-Project/e3sm_to_cmip.git
Path: scripts/cwl_workflows/atm-mon-plev/atm-plev.cwl Branch/Commit ID: bfc1b812e0de6a86c4bf482fa738c0010b2658f8 |
||
RNA-Seq alignment and transcript/gene abundance workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
||
trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 5230874e81911b6591cf859fe794f71f4eb8bb97 |
||
bwa_index
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730 |
||
sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
||
atm-unified.cwl
|
https://github.com/E3SM-Project/e3sm_to_cmip.git
Path: scripts/cwl_workflows/atm-unified-eam/atm-unified.cwl Branch/Commit ID: bfc1b812e0de6a86c4bf482fa738c0010b2658f8 |
||
mutect parallel workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
||
wf_run_demonstrator.cwl
|
https://github.com/BAMresearch/ModelCalibration.git
Path: usecases/Concrete/workflow/wf_run_demonstrator.cwl Branch/Commit ID: 99e745fe3387450c4cc52c130d2d1eaef76eb18a |
||
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
||
Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20 |