Explore Workflows

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/assembly/functional_annotation.cwl

Branch/Commit ID: master

https://github.com/hubmapconsortium/sprm.git

Path: pipeline.cwl

Branch/Commit ID: d42d6f5

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines3-wf.cwl

Branch/Commit ID: main

https://github.com/audrium/reana-demo-scattered-helloworld.git

Path: workflow/cwl/helloworld.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 1b0851e

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/svonworl/oxog-dockstore-tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: master

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 8515542

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/dynresreq-workflow-tooldefault.cwl

Branch/Commit ID: main

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_bqsr.cwl

Branch/Commit ID: downsample_and_recall