Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: c73baa5e10f074be767be0ff8691fdbc2047ef4a |
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GATK4_SomaticVariantCaller_4_1_3_0.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/GATK4_SomaticVariantCaller_4_1_3_0.cwl Branch/Commit ID: e6a35d208452fb00c25c588cc25d8ea4530a29ce |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 6ac47e5703d8c8cdac698de91143829b3911e9b2 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 700e73aaed6db1ad538dd27b2e1709f436ad3edb |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4 |
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workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_dispatch/workflow.cwl Branch/Commit ID: 243ba78438c6e9dfa3dfbfd6751124c978dd1c25 |
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Detect Docm variants
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 193b8de694f262ad55c7635a603c20c124748583 |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/workflow.cwl Branch/Commit ID: 243ba78438c6e9dfa3dfbfd6751124c978dd1c25 |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fastq.workflow.cwl Branch/Commit ID: 7b1df2ecce5a8727f2c546c5baa45c919edd8a76 |
