Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	blastp_wnode_naming	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	atm-unified.cwl	https://github.com/E3SM-Project/e3sm_to_cmip.git Path: scripts/cwl_workflows/atm-testing/atm-unified.cwl Branch/Commit ID: bfc1b812e0de6a86c4bf482fa738c0010b2658f8
	umi duplex alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8