Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 7e3e1cb249e85285e27ef3ebd4104965f835241d
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 7e3e1cb249e85285e27ef3ebd4104965f835241d
	exome alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533
	merge_filter.cwl	https://github.com/CompEpigen/ChIPseq_workflows.git Path: CWL/workflow_modules/merge_filter.cwl Branch/Commit ID: 50fc7f43e311be1a139031f54102b24ea40d55b0
	02-trim-se.cwl ChIP-seq 02 trimming - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 81555a89cc2d16bd3ab131a6685a44b44f08f927
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 4ea5956bb97ea2eb6de124bc9b6a6a81a14fd2e7