Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: toil_compatibility |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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exome alignment with qc
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https://github.com/mnneveau/cancer-genomics-workflow.git
Path: exome_alignment.cwl Branch/Commit ID: master |
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workflow-fetch-hmmscan.cwl
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https://github.com/ebi-wp/webservice-cwl.git
Path: workflows/workflow-fetch-hmmscan.cwl Branch/Commit ID: master |
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integrity.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: dev |
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pipeline-se-blacklist-removal.cwl
ATAC-seq pipeline - reads: SE - with blacklist removal |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl Branch/Commit ID: v1.0.0 |
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transcriptome_assemble
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https://github.com/yyoshiaki/DAT2-cwl.git
Path: workflow/transcriptome_assemble/transcriptome_assemble.cwl Branch/Commit ID: develop |
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no-outputs-wf.cwl
Workflow without outputs. |
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/no-outputs-wf.cwl Branch/Commit ID: master |
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exome alignment with qc
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: main |
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02-trim-pe.cwl
ATAC-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: v1.0.0 |
