Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 3168316 |
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any-type-compat.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/any-type-compat.cwl Branch/Commit ID: main |
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full_workflow_notcompact.cwl
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https://github.com/teoloup/cwltools.git
Path: full_workflow_notcompact.cwl Branch/Commit ID: master |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: v1.0 |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: master |
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deal_with_functional_annotation.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/assembly/deal_with_functional_annotation.cwl Branch/Commit ID: master |
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snaptools_create_snap_file.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: 5465f66 |
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wf_input_norm_and_entropy.cwl
This workflow normalizes clip aligned reads against a size-matched input sample. Then, an entropy score is calculated for each peak found. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_input_norm_and_entropy.cwl Branch/Commit ID: master |
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bam-bedgraph-bigwig.cwl
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https://github.com/Barski-lab/ga4gh_challenge.git
Path: subworkflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: v0.0.3 |
