Explore Workflows
View already parsed workflows here or click here to add your own
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bacterial_orthology
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![]() Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: master |
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gp_makeblastdb
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![]() Path: progs/gp_makeblastdb.cwl Branch/Commit ID: master |
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Raw sequence data to BQSR
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![]() Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d |
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wf_makeblastdb.cwl
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![]() Path: amr_finder/wf_makeblastdb.cwl Branch/Commit ID: master |
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etl_http_pdc.cwl
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![]() Path: workflows/dnaseq/etl_http_pdc.cwl Branch/Commit ID: 1.1 |
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exome alignment and germline variant detection
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![]() Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: downsample_and_recall |
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Functional analyis of sequences that match the 16S SSU
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![]() Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 71d9c83 |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
![]() Path: Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: main |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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![]() Path: workflows/emg-qc-single.cwl Branch/Commit ID: master |
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count-lines8-wf.cwl
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![]() Path: tests/count-lines8-wf.cwl Branch/Commit ID: main |