Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pindel parallel workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: master
workflow graph Single-Cell Manual Cell Type Assignment

Single-Cell Manual Cell Type Assignment Assigns identities to cells clustered with any of the “Single-Cell Cluster Analysis” pipelines. For “Single-Cell RNA-Seq Cluster Analysis” the results of this workflow are used in the “Single-Cell RNA-Seq Differential Expression Analysis”, “Single-Cell RNA-Seq Trajectory Analysis”, and — when combined with outputs from the “Cell Ranger Count (RNA+VDJ)” or “Cell Ranger Aggregate (RNA, RNA+VDJ)” workflow — in the “Single-Cell Immune Profiling Analysis” pipeline. For “Single-Cell ATAC-Seq Cluster Analysis”, the results of this workflow are used in the “Single-Cell ATAC-Seq Differential Accessibility Analysis” and “Single-Cell ATAC-Seq Genome Coverage” pipelines. For “Single-Cell WNN Cluster Analysis”, the results of this workflow are used in all of the above, except the “Single-Cell Immune Profiling Analysis” pipeline.

 https://github.com/datirium/workflows.git

Path: workflows/sc-ctype-assign.cwl

Branch/Commit ID: master
workflow graph Transcripts annotation workflow

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/TranscriptsAnnotation-wf.cwl

Branch/Commit ID: master
workflow graph wf_full_IDR_pipeline_2inputs.cwl

The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_2inputs.cwl

Branch/Commit ID: master
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl

Branch/Commit ID: 1.0.6
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 71d9c83
workflow graph count-lines14-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines14-wf.cwl

Branch/Commit ID: ea9f8634e41824ac3f81c3dde698d5f0eef54f1b
workflow graph transcoding-workflow.cwl

https://github.com/RoRu/Video-Packager.git

Path: cwl-scripts/transcoder/transcoding-workflow.cwl

Branch/Commit ID: master
workflow graph Get Proteins

https://github.com/ncbi/pgap.git

Path: wf_bacterial_prot_src.cwl

Branch/Commit ID: dev
workflow graph Quality assessment, amplicon classification

Workflow for quality assessment of paired reads and classification using NGTax 2.0. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Export module

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_ngtax.cwl

Branch/Commit ID: master