Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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fastq2fasta.cwl
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https://github.com/arvados/bh20-seq-resource.git
Path: workflows/fastq2fasta/fastq2fasta.cwl Branch/Commit ID: b0bf91571b562bbbd824dc0c8b3964a5b7a94f36 |
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Apply filters to VCF file
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: downsample_and_recall |
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wf_get_peaks_scatter_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_se.cwl Branch/Commit ID: master |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: dev |
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varscan somatic workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/varscan.cwl Branch/Commit ID: toil_compatibility |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: No_filters_detect_variants |
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cram_to_bam workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: low-vaf |
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snapanalysis_setup_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snapanalysis_setup_and_analyze.cwl Branch/Commit ID: 44dbe38 |
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facets-suite-workflow.cwl
Workflow for running the facets suite workflow on a single tumor normal pair Includes handling of errors in case execution fails for the sample pair |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/facets-suite-workflow.cwl Branch/Commit ID: master |
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fusion_workflow.cwl
Fusion workflow, runs STARFusion and Arriba |
https://github.com/bd2kgenomics/dockstore_workflow_fusion.git
Path: fusion_workflow.cwl Branch/Commit ID: 1.0.0 |
