Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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module-5
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-5.cwl Branch/Commit ID: dev |
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wf-variantcall.cwl
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https://github.com/FarahZKhan/bcbio_test_cwlprov.git
Path: somatic/somatic-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/mr-c/2020-covid-19-bh-viz.git
Path: Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: main |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8 Packed ID: qiime2-04-features.cwl |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: downsample_and_recall |
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word-mapping-dir.cwl#align-texts-wf.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/word-mapping-dir.cwl Branch/Commit ID: master Packed ID: align-texts-wf.cwl |
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compile1.cwl#main
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https://github.com/common-workflow-language/workflows.git
Path: workflows/compile/compile1.cwl Branch/Commit ID: master Packed ID: main |
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Detect Variants workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: downsample_and_recall |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.5 |
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qc_workflow.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/QC/qc_workflow.cwl Branch/Commit ID: 0.0.33_dmp |
