Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph encode_mapping_workflow.cwl

https://github.com/encode-dcc/pipeline-container.git

Path: local-workflows/encode_mapping_workflow.cwl

Branch/Commit ID: v1.0
workflow graph pymethylprocess.cwl

https://github.com/Christensen-Lab-Dartmouth/PyMethylProcess.git

Path: cwl/workflows/pymethylprocess.cwl

Branch/Commit ID: master
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: test
workflow graph AcceptParameterWorkflowMissing

this is a placeholder for a missing acceptance workflow.

 https://github.com/gammasim/workflows.git

Path: workflows/AcceptParameterWorkflowMissing.cwl

Branch/Commit ID: main
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-03-dada2.cwl
workflow graph cram_to_bam workflow

https://github.com/markrobbo/workflows.git

Path: workflows/hello/exome_alignment_packed.cwl

Branch/Commit ID: master

Packed ID: workflow.cwl
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_gvcf.cwl

Branch/Commit ID: master
workflow graph count-lines15-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines15-wf.cwl

Branch/Commit ID: master
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 5e82174