Explore Workflows

Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-01-import-data.cwl

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: downsample_and_recall

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 43d2fb8

https://github.com/ebi-jdispatcher/webservice-cwl.git

Path: workflows/workflow-blast-clustalo-phylogeny.cwl

Branch/Commit ID: master

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: develop

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_se.cwl

Branch/Commit ID: master

Set light guide efficiency as function of wavelength and incident angle.

https://github.com/gammasim/workflows.git

Path: workflows/SetLightGuideEfficiency.cwl

Branch/Commit ID: main

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-blast-clustalo-phylogeny.cwl

Branch/Commit ID: master

https://github.com/genome/cancer-genomics-workflow.git

Path: docm/workflow.cwl

Branch/Commit ID: toil_compatibility

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines11-wf-noET.cwl

Branch/Commit ID: main