Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bwa_mem.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
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bwa_index
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bwa_index.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_gridss.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f |
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Whole genome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bwa_mem.cwl Branch/Commit ID: cebfad2f456d672052ef8c83f5ff1b4f3b4368e4 |
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tt_kmer_top_n.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31 |
