Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph oc-workflow.cwl

https://github.com/KarchinLab/opencravat-cwl.git

Path: oc-workflow.cwl

Branch/Commit ID: ede16fc1c8b957823a8a1d826c8b5a2cf4c677c8
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: 0ce16a1ff9219b02b075800ec4f08be1cb60482e
workflow graph grep-and-count.cwl

https://github.com/manabuishii/cwl-samples.git

Path: grep-and-count.cwl

Branch/Commit ID: bee68ab4a890e552ab341558a305206b5f310a73
workflow graph bam to trimmed fastqs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl

Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
workflow graph pindel parallel workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73
workflow graph BwaAligner_1_0_0.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/BwaAligner_1_0_0.cwl

Branch/Commit ID: db347697cbf46ed1d160d50666943bd56a2646f4
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0
workflow graph Merge, annotate, and generate a TSV for SVs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/merge_svs.cwl

Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0