Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
workflow graph Viral contig assign

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/Assign/assign_swf.cwl

Branch/Commit ID: ff0992ba5374a5c969c39c12a769663a63de708e
workflow graph workflow.cwl

Implementing bamqc over and over again to get an idea of how easy or hard it is for a beginner to implement a basic workflow in different workflow systems.

https://github.com/garyluu/one-workflow-many-ways.git

Path: cwl/workflow.cwl

Branch/Commit ID: ceec932ee375423f7ee6ac28248c829909ad6927
workflow graph ViPhOG annotations

\"Run viral_contigs_annotation.py on an array of files\"

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/Annotation/viral_annotation_swf.cwl

Branch/Commit ID: 95c467f65a19b6e6e2522bfcd6d25b3e4370a905
workflow graph assembly-wf-virus.cwl

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: Assembly/workflow/assembly-wf-virus.cwl

Branch/Commit ID: 1fa429bde1fa7cb801cd1a51e31098f1e736f4c9
workflow graph runCRISPRCasFinder

Implementation of CRISPRCasFinder processing.

https://github.com/EBI-Metagenomics/CRISPRCasFinder-CWL.git

Path: src/workflows/runCRISPRCasFinderl.cwl

Branch/Commit ID: e0974da2e40f685b50dd38a5a01fd8ef26aba9b9
workflow graph presto.cwl

https://github.com/eosc-lofar/presto-cwl.git

Path: presto.cwl

Branch/Commit ID: 59d9428661aed849cdeac8ffc773735b9ee15f9d
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 85155424fa5654526517369be2fa479a7d4d90de
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 85155424fa5654526517369be2fa479a7d4d90de
workflow graph tRNA_selection.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 85155424fa5654526517369be2fa479a7d4d90de