Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph fastqtosam_pe.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/fastqtosam/fastqtosam_pe.cwl

Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52
workflow graph echo-wc.workflowstep.cwl

https://github.com/NLeSC/scriptcwl.git

Path: tests/data/echo-wc.workflowstep.cwl

Branch/Commit ID: a49148fed2242bfb4d45f0ff44ea52e728db79e9
workflow graph md5sum-workflow.cwl

https://github.com/dockstore-testing/md5sum-checker.git

Path: md5sum/md5sum-workflow.cwl

Branch/Commit ID: 728a681c52686fec4a148d75d98ee60ddecbaf22
workflow graph echo-wc_inline.cwl

Counts words of a message via echo and wc

 https://github.com/NLeSC/scriptcwl.git

Path: tests/data/workflows/echo-wc_inline.cwl

Branch/Commit ID: a49148fed2242bfb4d45f0ff44ea52e728db79e9
workflow graph 02-trim-se.cwl

ChIP-seq 02 trimming - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121
workflow graph Run tRNAScan

https://github.com/ncbi/pgap.git

Path: bacterial_trna/wf_trnascan.cwl

Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075
workflow graph 04-quantification-se-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl

Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121
workflow graph simple_two_step.cwl

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_two_step.cwl

Branch/Commit ID: deb45393512c8eb82de1adec82982b439933d7cd
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f