Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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SetArrayElementCoordinates
Transform array element coordinates into the coordinate system required by the simulation pipeline (i.e., CORSIKA system). |
https://github.com/gammasim/workflows.git
Path: workflows/SetArrayElementCoordinates.cwl Branch/Commit ID: main |
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exomeseq-gatk4-03-organizedirectories.cwl
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https://github.com/bespin-workflows/exomeseq-gatk4.git
Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl Branch/Commit ID: v2.0.3 |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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project-workflow.cwl
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https://github.com/mskcc/argos-cwl.git
Path: project-workflow.cwl Branch/Commit ID: master |
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packed.cwl#workflow_mc.cwl
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https://github.com/mr-c/cwltests.git
Path: cwl/packed.cwl Branch/Commit ID: pack_test Packed ID: workflow_mc.cwl |
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blastp_wnode_struct
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: c338cd3 |
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combine_counts.cwl
Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file. |
https://github.com/reddylab/bird-workflow.git
Path: 02_combine_counts/combine_counts.cwl Branch/Commit ID: main |
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hello_world_checker.cwl
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https://github.com/dockstore/hello_world.git
Path: hello_world_checker.cwl Branch/Commit ID: 1.03 |
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exomeseq-03-organizedirectories.cwl
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https://github.com/duke-gcb/bespin-cwl.git
Path: subworkflows/exomeseq-03-organizedirectories.cwl Branch/Commit ID: gatk4-fixes |
