Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788 |
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workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_md5checksums/workflow.cwl Branch/Commit ID: c73baa5e10f074be767be0ff8691fdbc2047ef4a |
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workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: c73baa5e10f074be767be0ff8691fdbc2047ef4a |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_download/workflow.cwl Branch/Commit ID: c73baa5e10f074be767be0ff8691fdbc2047ef4a |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788 |
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mergeAndMarkBams_4_1_3.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/mergeAndMarkBams_4_1_3.cwl Branch/Commit ID: 3fd91f30b041f222e0dc3d5bb5544cc6de38d3c3 |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: 77a9fa25b89ce73582a1ce6ba75fa6d2537fb8e8 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 47ccbd0bc7b45bf8b3c92d0a66c1a9a232367a5d |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788 |
