Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
workflow graph infuse_pipeline.cwl

https://github.com/cancerit/cgpRna.git

Path: cwls/infuse_pipeline.cwl

Branch/Commit ID: 5dce0b09e5a8845458ae2bef08c1cfbff0c01d63
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00
workflow graph infuse_pipeline.cwl

https://github.com/cancerit/cgpRna.git

Path: cwls/infuse_pipeline.cwl

Branch/Commit ID: 60240d4525f74744694af5a2596d7f1ae5cffb54
workflow graph workflow to detect fusion events

A workflow to run cpgRna Infuse pipeline from a single input BAM file (can be aligned or unaligned) of RNA-seq reads using cgpRna container. See the [cgpRna](https://github.com/cancerit/cgpRna) website for more information.

https://github.com/cancerit/cgpRna.git

Path: cwls/infuse_pipeline.cwl

Branch/Commit ID: 83edecdfecf18681196640edf75c693e02b1da63
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf_mouse.cwl

Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f
workflow graph find downloadable files in zenodo community

For a given Zenodo community, retrieve a list of all its downloadable files

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-community-links.cwl

Branch/Commit ID: dedbb79f76f110eaafd065aee8401052c8d51a0e
workflow graph gethoge-and-pigz.cwl

https://github.com/dbcls/AOE.git

Path: gethoge-and-pigz.cwl

Branch/Commit ID: 6090d52a063b6dff24b4d30f6605f5b9cbbbff40
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba