Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	extract_readgroups_bam_http.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b
	cwlsite.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/site/cwlsite.cwl Branch/Commit ID: 46b7f9766d1bc8a4871474eee25ec730b4e173da
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095
	steplevel-resreq.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9
	default-wf5.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/default-wf5.cwl Branch/Commit ID: 0e98de8f692bb7b9626ed44af835051750ac20cd
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095