Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: ad65dc1dfff9afa5077f498b85e699716c47f6cb |
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trnascan_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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format-maf
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/portal-formatting.cli/1.0.0/format-maf.cwl Branch/Commit ID: 425970cb18efb69b42edf26f92c07b7683a62576 |
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Samtools Merge - Sort - Index
This CWL performs samtools-merge in order to combine aligned reads from Hisat2 and Bowtie2 (unmapped reads) for an array of file pairs. Subsequently the merged BAMs are sorted and named according to sample (user input) and the index file for every BAM is generated (.bai). version: 0.01 |
https://github.com/mr-c/elixir-gr-project.git
Path: CWL/workflows/merge-sort-index.cwl Branch/Commit ID: 6a1a6b9d5a152e783fe3f794ccce35387d02fd0d |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5 |
