Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph test-workflow.cwl

https://github.com/hacchy1983/CWL-workflows.git

Path: Workflows/test-workflow.cwl

Branch/Commit ID: master
workflow graph samples_fillout_index_batch_workflow.cwl

Wrapper to run bam indexing on all bams before submitting for samples fillout Also includes steps to pre-filter some maf input files NOTE: each sample in a sample_group must have a .bam file, and there must be a minumum of 1 .maf file amoungst samples in the same sample_group this means that for each sample in the sample_group, a .bam is required but a .maf is optional as long as one sample in the group has a .maf this also means that singleton sample groups, or a sample group with only one sample, MUST include a .maf file; singletons cannot lack a .maf NOTE: all .maf files must be valid, at a minimum they must have a header and at least one variant if a sample has no variants in its .maf file, or has an empty .maf file, then it should NOT have a maf_file entry associated with it

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_index_batch_workflow.cwl

Branch/Commit ID: master
workflow graph exomeseq-gatk4-02-variantdiscovery.cwl

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl

Branch/Commit ID: v2.0.3
workflow graph hi-c-processing-pairs-nonorm.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl

Branch/Commit ID: master
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: fb9d160
workflow graph prefetch_fastq.cwl

Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: sratoolkit/prefetch_fastq.cwl

Branch/Commit ID: release
workflow graph htseq_workflow.cwl

https://github.com/nci-gdc/htseq-cwl.git

Path: workflows/subworkflows/htseq_workflow.cwl

Branch/Commit ID: master
workflow graph rna-seq-pipeline-per-sample_PE.cwl

https://github.com/yamaken37/jga-analysis.git

Path: rna-seq/Workflows/rna-seq-pipeline-per-sample_PE.cwl

Branch/Commit ID: rna-seq
workflow graph canine_add_rna_header_to_vcf_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_add_rna_header_to_vcf_module.cwl

Branch/Commit ID: master
workflow graph canine_snpeff_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_snpeff_module.cwl

Branch/Commit ID: master