Explore Workflows

https://github.com/ddbj/human-reseq.git

Path: Workflows/fastqPE2bam.multisamples.cwl

Branch/Commit ID: master

Single-cell RNA-Seq Alignment Runs Cell Ranger Count to quantify gene expression from a single-cell RNA-Seq library.

https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-align-wf.cwl

Branch/Commit ID: main

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 0cd2d70

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: master

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.3.2

https://github.com/BerndDoser/Spherinator.git

Path: streamflow/hipster.cwl

Branch/Commit ID: streamflow

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: fa86fce

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_IG.cwl

https://doi.org/10.1007/s12275-011-1213-z

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: f993cad