Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
![]() Path: wf_common.cwl Branch/Commit ID: 7b21dc40840852f3942c31b9c472346ea3f9a3ca |
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varscan somatic workflow
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![]() Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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count-lines11-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: 0b3846fbf866584870a0b1ce902b5574f549dfee |
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hi-c-processing-pairs.cwl
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![]() Path: cwl_awsem_v1/hi-c-processing-pairs.cwl Branch/Commit ID: 46dbd4c38119ef8a2d00b44678e45dafd430f5fa |
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Varscan Workflow
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![]() Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595 |
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spurious_annot
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![]() Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 7b21dc40840852f3942c31b9c472346ea3f9a3ca |
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Super-enhancer post ChIP-Seq analysis
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
![]() Path: workflows/super-enhancer.cwl Branch/Commit ID: 91bb63948c0a264334b9007ef85f936768d90d11 |
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Detect DoCM variants
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![]() Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595 |
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Run genomic CMsearch (5S rRNA)
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![]() Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 5cc4af517f82f4cda3023644d61abd85cbc1fc18 |
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Unaligned bam to sorted, markduped bam
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![]() Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4 |