Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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workflow_simple.cwl
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https://github.com/mr-c/scalability-reproducibility-chapter.git
Path: CWL/workflow_simple.cwl Branch/Commit ID: CWL |
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qiime2 rarefaction visualization
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-07-alpha-rarefaction.cwl Branch/Commit ID: develop |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: a8abd0e |
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basename-fields-test.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/basename-fields-test.cwl Branch/Commit ID: main |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 1.0.6 |
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encode_mapping_workflow.cwl
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https://github.com/ENCODE-DCC/pipeline-container.git
Path: local-workflows/encode_mapping_workflow.cwl Branch/Commit ID: master |
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waltz_workflow_all_bams.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: 0.0.33_dmp |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 56dafa4 |
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Chunked version of phmmer-v3.2.cwl
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: cwlexec |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: master |
