Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph magicblast-alignment-pe

This workflow aligns the fastq files using magicblast for paired-end samples

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/magicblast-alignment.cwl

Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419
workflow graph Creates FASTA file from BED coordinates

This workflow creates FASTA file from BED coordinates

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/fasta-from-bed.cwl

Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2
workflow graph BLASTP, parse, dump FASTA

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_three_step.cwl

Branch/Commit ID: 0d2a5b145fce0e8424b7cebc4d2881cc30e40ca4
workflow graph genomics-workspace-cds.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl

Branch/Commit ID: b1e1b906fcfb2c0fad8811fb8ab03009282c1d19
workflow graph facets

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/facets.cwl

Branch/Commit ID: 72353a747f45ffe35863c3b6c70b28a676a97643
workflow graph samples_fillout_workflow.cwl

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_workflow.cwl

Branch/Commit ID: e19ef998e906eb915cf4351a3599abd9bff57205
workflow graph realignment.cwl

https://github.com/mskcc/roslin-cwl.git

Path: modules/pair/realignment.cwl

Branch/Commit ID: 4034144f39a9428307e82efe1f812c1d37c79de5
workflow graph portal-workflow.cwl

https://github.com/mskcc/pluto-cwl.git

Path: cwl/portal-workflow.cwl

Branch/Commit ID: 342e6f1f4f7a3839e579fbe96ccc8d6f7a61ac77
workflow graph fillout_workflow.cwl

Workflow to run GetBaseCountsMultiSample fillout on a number of bam files with a single maf file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/fillout_workflow.cwl

Branch/Commit ID: e19ef998e906eb915cf4351a3599abd9bff57205
workflow graph tmb_workflow.cwl

Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/tmb_workflow.cwl

Branch/Commit ID: 342e6f1f4f7a3839e579fbe96ccc8d6f7a61ac77