Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Detect Variants workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
workflow graph mutect panel-of-normals workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/panel_of_normals.cwl

Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
workflow graph PCA - Principal Component Analysis

Principal Component Analysis --------------- Principal component analysis (PCA) is a statistical procedure that uses an orthogonal transformation to convert a set of observations of possibly correlated variables (entities each of which takes on various numerical values) into a set of values of linearly uncorrelated variables called principal components. The calculation is done by a singular value decomposition of the (centered and possibly scaled) data matrix, not by using eigen on the covariance matrix. This is generally the preferred method for numerical accuracy.

 https://github.com/datirium/workflows.git

Path: workflows/pca.cwl

Branch/Commit ID: a0b22644ca178b640fb74849d23b7c631022f0b5
workflow graph basic_example.cwl

https://github.com/lrodrin/vre-process_cwl-executor.git

Path: tests/basic/data/workflows/basic_example.cwl

Branch/Commit ID: 00d6c35e3932bef3906a9158939cc0b74bea2dda
workflow graph WorkflowWaterMasks.cwl

https://github.com/Geomatys/Testbed16.git

Path: application-packages/52N/WorkflowWaterMasks/WorkflowWaterMasks.cwl

Branch/Commit ID: 15a91a881d24b234425c91fe229ecc0326d92ec2
workflow graph analysis for assembled sequences

rna / protein - qc, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/assembled.workflow.cwl

Branch/Commit ID: 7b1df2ecce5a8727f2c546c5baa45c919edd8a76
workflow graph 01-qc-pe.cwl

ChIP-seq 01 QC - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f
workflow graph Downsample and HaplotypeCaller

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/downsample_and_recall.cwl

Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
workflow graph scatter-valuefrom-wf5.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf5.cwl

Branch/Commit ID: 814bd0405a7701efc7d63e8f0179df394c7766f7