Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0 |
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workflow-slurmcern.cwl
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https://github.com/reanahub/reana-demo-root6-roofit.git
Path: workflow/cwl/workflow-slurmcern.cwl Branch/Commit ID: 5a1d6cb8c6ef34958972246dbc6e58c267bdc77c |
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Unaligned bam to sorted, markduped bam
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54 |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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ribosomal_cleanup
This workflow detect and remove ribosomal from a DNA fasta file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Contamination/ribosomal-cleanup.cwl Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098 |
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qc_aggregator
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https://github.com/msk-access/qc_generation.git
Path: aggregate_visualize__packed.cwl Branch/Commit ID: 248e7c3edaff48e1b97a7931d66aa3b23ce97f54 Packed ID: qc_aggregator.cwl |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |