Explore Workflows
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Graph | Name | Retrieved From | View |
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qiime2 rarefaction visualization
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
![]() Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: qiime2-07-alpha-rarefaction.cwl |
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pipeline-se.cwl
ATAC-seq pipeline - reads: SE |
![]() Path: v1.0/ATAC-seq_pipeline/pipeline-se.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121 |
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gcaccess_from_list
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![]() Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4 |
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Per-region pindel
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![]() Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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kmer_top_n_extract
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![]() Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57 |
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env-wf2.cwl
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![]() Path: v1.0/v1.0/env-wf2.cwl Branch/Commit ID: fe164457f370c2dfec5156f6d6d45818d53cb871 |
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transcriptome_assemble.cwl
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![]() Path: workflow/transcriptome_assemble/transcriptome_assemble.cwl Branch/Commit ID: 4c90bc270e271b24caacaf000116727ff8ec81f8 |
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sec-wf.cwl
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![]() Path: tests/wf/sec-wf.cwl Branch/Commit ID: 814bd0405a7701efc7d63e8f0179df394c7766f7 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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![]() Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4 |
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Super-enhancer post ChIP-Seq analysis
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
![]() Path: workflows/super-enhancer.cwl Branch/Commit ID: 5e7385b8cfa4ddae822fff37b6bd22eb0370b389 |