Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Unaligned bam to sorted, markduped bam
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
fail-unconnected.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/fail-unconnected.cwl Branch/Commit ID: 9a23706ec061c5d2c02ff60238d218aadf0b5db9 |
|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
bam_readcount workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
phase VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
Unaligned BAM to BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
Subworkflow to allow calling different SV callers which require bam files as inputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
Exome QC workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
umi molecular alignment workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
umi duplex alignment workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
