Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Bisulfite alignment and QC
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
|
|
|
Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: f58bb8121e49a72cf7419a4a38c08f01b931dd37 |
|
|
|
wgs alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
|
|
|
assm_assm_blastn_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: dcbbce152fbff2637f102471fb80318244492853 |
|
|
|
Per-region pindel
|
https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73 |
|
|
|
bgzip and index VCF
|
https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73 |
|
|
|
cache_asnb_entries
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: dcbbce152fbff2637f102471fb80318244492853 |
|
|
|
wgs alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
|
|
|
extract_capture_kit.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_capture_kit.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c |
|
|
|
kf-cram2gvcf-bam-input.cwl
|
https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/kf-cram2gvcf-bam-input.cwl Branch/Commit ID: a1cd86214398947c57529677ec10f97b606b7de2 |
