Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph panel of normals workflow

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: panel_of_normals/workflow.cwl

Branch/Commit ID: master
workflow graph trimmed_fastq

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: 1.0.5
workflow graph MACE ChIP-exo peak caller workflow for single-end samples

This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE

 https://gitlab.com/r78v10a07/cwl-workflow.git

Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl

Branch/Commit ID: master
workflow graph assembly-wf--v.5-cond.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/assembly-wf--v.5-cond.cwl

Branch/Commit ID: master
workflow graph qiime2 demux sequences

Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-02-demux.cwl
workflow graph beast-2step-workflow.cwl

https://github.com/GusEllerm/CWL_workflows.git

Path: workflows/BEAST_examples/beast-2step-workflow.cwl

Branch/Commit ID: main
workflow graph waltz_workflow_all_bams.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/waltz/waltz_workflow_all_bams.cwl

Branch/Commit ID: master
workflow graph count-lines2-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines2-wf.cwl

Branch/Commit ID: main
workflow graph pipeline-se-blacklist-removal.cwl

ATAC-seq pipeline - reads: SE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph module-2.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/module-2.cwl

Branch/Commit ID: master