Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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star-stringtie_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/star-stringtie/paired_end/star-stringtie_wf_pe.cwl Branch/Commit ID: master |
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Metagenomics workflow
Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (quality trimming) - kraken2 (taxonomy) - bbmap contamination filter - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - Contig binning (OPTIONAL) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_metagenomics_assembly.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: master |
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step-valuefrom-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/step-valuefrom-wf.cwl Branch/Commit ID: main |
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bgzip and index VCF
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 5e82174 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 71d9c83 |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: 0.2.3 |
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workflow-blast-phobius.cwl
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https://github.com/ebi-wp/webservice-cwl.git
Path: workflows/workflow-blast-phobius.cwl Branch/Commit ID: master |
