Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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germline-gpu-v4.0.1.cwl
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https://github.com/NCGM-genome/WGSpipeline.git
Path: Workflows/germline-gpu-v4.0.1.cwl Branch/Commit ID: main |
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workflow.cwl
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https://gitlab.ebrains.eu/sofiakar/yre-standardised-workflows.git
Path: Workflows/PSD_workflow_bucket_2/workflow.cwl Branch/Commit ID: main |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-08-taxonomic-analysis.cwl |
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realign-distr.cwl
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https://github.com/sentieon/sentieon-cwl.git
Path: stage/realign-distr.cwl Branch/Commit ID: master |
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01-qc-pe.cwl
RNA-seq 01 QC - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: master |
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qiime2 demux paired sequences
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https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-02-demux-emp-paired.cwl Branch/Commit ID: develop |
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workflow.cwl
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https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum.git
Path: workflows/deseq2/workflow.cwl Branch/Commit ID: main |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 3039744 |
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Run pindel on provided region
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: downsample_and_recall |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: master |
