Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	scatter-valuefrom-wf5.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf5.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 252e7214ac64cb1128881e76743013e61bc7ec38
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: bb2f26dfe630179737ec2ff08a8614f1f47abcaf
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d
	spiel.cwl	https://github.com/gijzelaerr/spiel.git Path: spiel.cwl Branch/Commit ID: 8622ab30f9bb8bc26c83bde1ac7ffcf55cf187c7
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c
	cache_test_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094