Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	rnaseq-header.cwl	https://github.com/datirium/workflows.git Path: metadata/rnaseq-header.cwl Branch/Commit ID: 77970404d7c704cba965ae646582e19e5d76aabe
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a
	wf_rescue_ratio_1input.cwl Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks.	https://github.com/YeoLab/merge_peaks.git Path: cwl/wf_rescue_ratio_1input.cwl Branch/Commit ID: fadfca0f6da710104c4cf7931e9ab2656f5f737d
	01-qc-pe.cwl STARR-seq 01 QC - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/STARR-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c
	dynresreq-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	blastp_wnode_struct	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945
	bacterial_kmer	https://github.com/ncbi/pgap.git Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4
	bacterial_kmer	https://github.com/ncbi/pgap.git Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee