Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 3stepWorkflow.cwl

https://github.com/giannisdoukas/CWLJNIKernel.git

Path: tests/cwl/3stepWorkflow.cwl

Branch/Commit ID: master
workflow graph hi-c-processing-pairs.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs.cwl

Branch/Commit ID: master
workflow graph Run genomic CMsearch (Rfam rRNA)

https://github.com/ncbi/pgap.git

Path: bacterial_ncrna/wf_gcmsearch.cwl

Branch/Commit ID: dev
workflow graph downsample unaligned BAM and align

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/downsample_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph kallisto-demo.cwl

https://github.com/common-workflow-library/legacy.git

Path: workflows/kallisto-demo.cwl

Branch/Commit ID: master
workflow graph Water bodies detection based on NDWI and the otsu threshold

Water bodies detection based on NDWI and otsu threshold applied to a single Sentinel-2 COG STAC item

 https://github.com/eoap/quickwin.git

Path: cwl-workflow/app-water-body-cloud-native.cwl

Branch/Commit ID: main

Packed ID: main
workflow graph checker_workflow_wrapping_tool.cwl

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_tool.cwl

Branch/Commit ID: 1.3.0
workflow graph maw_single.cwl

https://github.com/zmahnoor14/MAW.git

Path: cwl/maw_single.cwl

Branch/Commit ID: main
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop
workflow graph mutect panel-of-normals workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/panel_of_normals.cwl

Branch/Commit ID: No_filters_detect_variants