Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl	https://github.com/rawgene/cwl.git Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl Branch/Commit ID: 54adf7fcfbf48c9cc4cfcf384e04eede39b5e5f6
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: bb2f26dfe630179737ec2ff08a8614f1f47abcaf
	checker-workflow-wrapping-workflow.cwl This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results	https://github.com/dockstore-testing/md5sum-checker.git Path: checker-workflow-wrapping-workflow.cwl Branch/Commit ID: f7927a52c0583a0bb96ec23f0509683ea7f6cd38
	js_output_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/js_output_workflow.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 16d1198871195e2229fd44dd0ad94a4ed6a87caf
	step-valuefrom3-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: cf9d7cdefa6dfb3b678636da02bc55b6108c04ac
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: f6359e34e88cbd8b8a52de86d5377294411ce965
	SSU-from-tablehits.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: e1b0fceb0efce1b787b5782408cdf6f163b8ff56
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_md5checksums/workflow.cwl Branch/Commit ID: 7bfe5f8bcb70aab6d971417e72672703f2e623e5