Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bisulfite QC tools
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59 |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59 |
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genomics-workspace-genome.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-genome.cwl Branch/Commit ID: f6359e34e88cbd8b8a52de86d5377294411ce965 |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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Align reference proteins plane complete workflow
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58 |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58 |
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Filter single sample sv vcf from paired read callers(Manta/Smoove)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
