Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_gridss.cwl

Branch/Commit ID: master
workflow graph Detect Docm variants

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/docm_cle.cwl

Branch/Commit ID: low-vaf
workflow graph rnaseq-alignment-quantification-nosplice

This workflow QC, alignment and quantification from TPMCalculator for not spliced genomes

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RNA-Seq/rnaseq-alignment-quantification_nosplice.cwl

Branch/Commit ID: master
workflow graph ValidateReadout

Validate readout (if applicable for high and low gain chain).

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateReadout.cwl

Branch/Commit ID: main
workflow graph qc_workflow_wo_waltz.cwl

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: master
workflow graph Create target and anti-target files for CNA analysis

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/cnvkit_prep_regions.cwl

Branch/Commit ID: master
workflow graph final_filtering

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/final_filtering.cwl

Branch/Commit ID: 1.0.5
workflow graph count-lines9-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl

Branch/Commit ID: 47435d7bfa0240b799acb8e1e8f6b6f8ce03c53c
workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: 0.3.0
workflow graph rest_parallel.cwl

https://github.com/CWL-FLOps/DecentralizedFL-CWL.git

Path: CWL_Workflow/rest_parallel.cwl

Branch/Commit ID: main