Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 551493f5c24b757a46cd22821a05e6ac6dcceb7f
	Hello World Outputs a message using echo	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/hello-workflow.cwl Branch/Commit ID: bf93dd3e6e3261e1455530984ce045f283535d17
	scatter-valuefrom-wf1.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf1.cwl Branch/Commit ID: bf93dd3e6e3261e1455530984ce045f283535d17
	Filter Protein Alignments I	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: 4533a5e930305c674057bc4cf5dda4f39d39b5df
	Filter Protein Alignments I	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: 6d04f5d65d1d4893706d9ae7e27341633333054f
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 4533a5e930305c674057bc4cf5dda4f39d39b5df
	scatter-valuefrom-wf5.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf5.cwl Branch/Commit ID: 20d664eff23e59aa57908345bfdb1ceeab3438f2
	scatter-valuefrom-wf6.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/scatter-valuefrom-wf6.cwl Branch/Commit ID: 9a23706ec061c5d2c02ff60238d218aadf0b5db9
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 079ef6922a948be5ea95cc9a008584c97038c6ac
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_md5checksums/workflow.cwl Branch/Commit ID: 337527c5512d2fb7644814bbfb4a338fd45ec907