Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	step-valuefrom2-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: cf9d7cdefa6dfb3b678636da02bc55b6108c04ac
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 252e7214ac64cb1128881e76743013e61bc7ec38
	count-lines4-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl Branch/Commit ID: cf9d7cdefa6dfb3b678636da02bc55b6108c04ac
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 252e7214ac64cb1128881e76743013e61bc7ec38
	echo-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/override/echo-wf.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/revsort.cwl Branch/Commit ID: cf9d7cdefa6dfb3b678636da02bc55b6108c04ac
	Run genomic CMsearch (5S rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 16d1198871195e2229fd44dd0ad94a4ed6a87caf
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: 664de58d95728edbf7d369d894f9037ebe2475fa