Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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Create Genomic Collection for Bacterial Pipeline, ASN.1 input
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a |
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Per-region pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268 |
