Explore Workflows
View already parsed workflows here or click here to add your own
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SAMSA2 pipeline
SAMSA2 complete workflow for meta-omics read annotation Steps: - Diamond read blastx - Refseq - SEED - SAMSA2 processing |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_samsa2.cwl Branch/Commit ID: d6893a25b58b9b25fb76c5e060974b54d9eabc41 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc |
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taxonomy_check_16S
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https://github.com/ncbi/pgap.git
Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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PCA - Principal Component Analysis
Principal Component Analysis --------------- Principal component analysis (PCA) is a statistical procedure that uses an orthogonal transformation to convert a set of observations of possibly correlated variables (entities each of which takes on various numerical values) into a set of values of linearly uncorrelated variables called principal components. The calculation is done by a singular value decomposition of the (centered and possibly scaled) data matrix, not by using eigen on the covariance matrix. This is generally the preferred method for numerical accuracy. |
https://github.com/datirium/workflows.git
Path: workflows/pca.cwl Branch/Commit ID: e99e80a2c19682d59947bde04a892d7b6d90091c |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/datirium/workflows.git
Path: subworkflows/heatmap-prepare.cwl Branch/Commit ID: 7290eb220c90a087dffde04efae3678286aa92d0 |
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env-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/env-wf1.cwl Branch/Commit ID: a0f2d38e37ff51721fdeaf993bb2ab474b17246b |
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mutect panel-of-normals workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: ec5355f335852e51c6938809c16ea1d230a3f983 |
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pass-unconnected.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/pass-unconnected.cwl Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57 |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc |
