Explore Workflows

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: v0.1.0

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: downsample_and_recall

https://github.com/ncbi/pgap.git

Path: spurious_annot/wf_spurious_annot_pass1.cwl

Branch/Commit ID: 5282690e0f634a5f83107ba878fe62cbbb347408

https://github.com/jarnolaitinen/RD_pipeline.git

Path: workflow.cwl

Branch/Commit ID: master

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflow_modules/chip_qc.cwl

Branch/Commit ID: master

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: f993cad

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: 0.0.33_dmp

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_create_readme/readme-assembly-workflow.cwl

Branch/Commit ID: master

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-dir-pack.cwl

Branch/Commit ID: master

Packed ID: align-texts-wf.cwl