Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/join-reads2reference2plot.cwl Branch/Commit ID: master |
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create_snap_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: create_snap_and_analyze.cwl Branch/Commit ID: 302f1f3 |
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SPRM pipeline
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https://github.com/hubmapconsortium/sprm.git
Path: pipeline.cwl Branch/Commit ID: 5b41e86 |
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guesser.cwl
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https://github.com/RoRu/Video-Packager.git
Path: cwl-scripts/guesser/guesser.cwl Branch/Commit ID: master |
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star_samtools_stringtie_prepDE_DESeq2.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_stringtie_prepDE_DESeq2.cwl Branch/Commit ID: master |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: c211071 |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: f8ea70d |
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Bisulfite alignment and QC
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: downsample_and_recall |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 1b0851e |
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record-in-secondaryFiles-missing-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/record-in-secondaryFiles-missing-wf.cwl Branch/Commit ID: master |
