Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: bba6c580ab88e077f6aa2c2ee7c73159f3f9156e |
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basic_example.cwl
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https://github.com/inab/vre_cwl_executor.git
Path: tests/basic/data/workflows/basic_example.cwl Branch/Commit ID: 3439b3a778d8eb1730def8b82cf0c044e5fca68a |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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workflow.cwl
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https://github.com/inab/Wetlab2Variations.git
Path: cwl-workflows/demonstrator/workflow.cwl Branch/Commit ID: 3c3b08e84c9c9ada4672b014a8d40f360ddf5b8b |
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basic_example.cwl
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https://github.com/inab/vre_cwl_executor.git
Path: tests/basic/data/workflows/basic_example.cwl Branch/Commit ID: 18951998a3c5f899179c81f98d7f99e2ca186287 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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Fact validation pipeline general workflow, Ammar Ammar <ammar257ammar@gmail.com>
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https://github.com/MaastrichtU-IDS/FaVLib.git
Path: workflow/main-workflow-aynec.cwl Branch/Commit ID: f239080ab539981caa641f60ffe821b33a899d53 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
