Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
workflow graph QIIME2 Step 3

QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting

https://github.com/bespin-workflows/16s-qiime2.git

Path: 16s-step3-alpha-beta-analysis.cwl

Branch/Commit ID: b4c07a7e07ba9ce862a2be057a905d300f3c8882
workflow graph genomics-workspace-transcript.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl

Branch/Commit ID: 337527c5512d2fb7644814bbfb4a338fd45ec907
workflow graph scatter-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl

Branch/Commit ID: a3d565bf8e630101d25d31804cfbceb0a0ba28de
workflow graph Seed Search Compartments

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/revsort.cwl

Branch/Commit ID: 40fcfc01812046f012acf5153cc955ee848e69e3
workflow graph worldpopulation.cwl

https://github.com/reanahub/reana-demo-worldpopulation.git

Path: workflow/cwl/worldpopulation.cwl

Branch/Commit ID: 0dbd2596a935d734c47e079f4edd9faecafac1f3
workflow graph qiime2 identify differentially abundant features

Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-09-ancom.cwl

Branch/Commit ID: b4c07a7e07ba9ce862a2be057a905d300f3c8882
workflow graph env-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl

Branch/Commit ID: 4fd5ca5a927594c361a9320d5331b326d06cecd3