Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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BLAST against rRNA db
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263 |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: bb2f26dfe630179737ec2ff08a8614f1f47abcaf |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65 |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263 |
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transform.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b |
