Explore Workflows
View already parsed workflows here or click here to add your own
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LHCb MC workflow
This workflow is composed of 2 main steps that should generate 2 types of jobs: * MCSimulation (CommandLineTool): Gauss execution * MCReconstruction (Workflow): Boole, Moore, Brunel and DaVinci executions based on Gauss outputs |
https://github.com/aldbr/dirac-cwl-proto.git
Path: test/workflows/lhcb/description.cwl Branch/Commit ID: main |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: a5b2aa9 |
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oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: oxog_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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exomeseq-01-preprocessing.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-01-preprocessing.cwl Branch/Commit ID: master |
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indexing_bed
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: master |
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rw-flow.cwl
run multiple rw stages sequentially using earlier step output as later stage input_bam |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/rw-flow.cwl Branch/Commit ID: master |
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gk--store-xvs-row.cwl
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https://github.com/vdikan/cwl-gk-thermal.git
Path: cwl/gk--store-xvs-row.cwl Branch/Commit ID: master |
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LSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: 43d2fb8 |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_mem.cwl Branch/Commit ID: master |
