Explore Workflows
View already parsed workflows here or click here to add your own
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/svonworl/oxog-dockstore-tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
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inpdir_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inpdir_update_wf.cwl Branch/Commit ID: master |
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checker_workflow_wrapping_workflow.cwl
This demonstrates how to wrap a \"real\" workflow with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git
Path: checker_workflow_wrapping_workflow.cwl Branch/Commit ID: develop |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: steps/illumination_first_stitching.cwl Branch/Commit ID: no-gpu-for-cwl-vis-only |
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sgseq_cwl.cwl
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https://github.com/rdocking/sgseq_cwl.git
Path: cwl/sgseq_cwl.cwl Branch/Commit ID: master |
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main-somatic.cwl
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https://github.com/bcbio/test_bcbio_cwl.git
Path: somatic/somatic-workflow/main-somatic.cwl Branch/Commit ID: master |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: ce04e2c |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 8515542 |
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scatter-wf1.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: master |
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output-arrays-file-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/output-arrays-file-wf.cwl Branch/Commit ID: master |
