Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/andurill/access-pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf.cwl

Branch/Commit ID: master
workflow graph Low vaf Detect Variants workflow for Megan Cooper

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/low_vaf_detect_variants.cwl

Branch/Commit ID: low-vaf
workflow graph wf-loadContents.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents.cwl

Branch/Commit ID: main
workflow graph Sentinel-3 SLSTR Level-2 reprojection and tiling

This service takes as input a Sentinel-3 SLSTR Level 2 (SL_2_LST____) product on DESCENDING pass and does the reprojection and tiling

 https://github.com/EOEPCA/proc-ades.git

Path: docs/examples/slstr-tiling.cwl

Branch/Commit ID: master

Packed ID: slstr-tiling
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: 5dc7c5c
workflow graph main.cwl

https://github.com/smc-rna-challenge/Ginny-8050015.git

Path: main.cwl

Branch/Commit ID: master
workflow graph varscanW.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: varscanW.cwl

Branch/Commit ID: release
workflow graph rhapsody_targeted_1.9-beta.cwl#UncompressDatatables.cwl

https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: master

Packed ID: UncompressDatatables.cwl
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 1.0.0