Explore Workflows
View already parsed workflows here or click here to add your own
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GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl
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Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl Branch/Commit ID: 1.0.1 |
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preparation_workflow.cwl
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Path: utils-cwl/subworkflow/preparation_workflow.cwl Branch/Commit ID: master |
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tpp.cwl
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Path: trans_proteomic_pipeline/tpp.cwl Branch/Commit ID: master |
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Transcripts annotation workflow
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Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: master |
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siamcat.cwl
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Path: siamcat.cwl Branch/Commit ID: master |
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04-quantification-pe-unstranded.cwl
RNA-seq 04 quantification |
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl Branch/Commit ID: master |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
Path: pcawg_annotate_wf.cwl Branch/Commit ID: 1.0.0 |
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wf_full_IDR_pipeline_2inputs_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
Path: cwl/wf_full_IDR_pipeline_2inputs_scatter.cwl Branch/Commit ID: master |
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scatter GATK HaplotypeCaller over intervals
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Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: master |
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wf-alignment.cwl
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Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-alignment.cwl Branch/Commit ID: master |
