Explore Workflows

# Set Operations for Peaks This workflow takes as input multiple peak list TSV files (the `iaintersect_result.tsv` output under the \"Files\" output tab) from the ChIP, ATAC, C&R, or diffbind workflows and performs the user-selected set operation on the group. Set operations include intersection, union, difference, and complement. See the tooltip for the `set_operator` input for more details.

https://github.com/datirium/workflows.git

Path: workflows/filter-peaks-by-overlap.cwl

Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines8-wf-noET.cwl

Branch/Commit ID: master

Outputs a message using echo

https://gitlab.cs.man.ac.uk/soiland-reyes/test1337.git

Path: hello.cwl

Branch/Commit ID: master

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: steps.cwl

Branch/Commit ID: b8e641c

PGAP pipeline for external usage, powered via containers

https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: test

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 1.0.0

https://github.com/genome/cancer-genomics-workflow.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: toil_compatibility

https://github.com/KarchinLab/opencravat-cwl.git

Path: oc-workflow.cwl

Branch/Commit ID: master

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520104.cwl

Branch/Commit ID: main

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-full-step-siesta.cwl

Branch/Commit ID: master